Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020.
Identifieur interne : 000C42 ( Main/Exploration ); précédent : 000C41; suivant : 000C43Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020.
Auteurs : Fabiana Gámbaro [France] ; Sylvie Behillil [France] ; Artem Baidaliuk [France] ; Flora Donati [France] ; Mélanie Albert [France] ; Andreea Alexandru [France] ; Maud Vanpeene [France] ; Méline Bizard [France] ; Angela Brisebarre [France] ; Marion Barbet [France] ; Fawzi Derrar [Algérie] ; Sylvie Van Der Werf [France] ; Vincent Enouf [France] ; Etienne Simon-Loriere [France]Source :
- Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin [ 1560-7917 ] ; 2020.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence (MeSH), Betacoronavirus (MeSH), Coronavirus (classification), Coronavirus (génétique), Coronavirus (isolement et purification), France (épidémiologie), Génome viral (génétique), Humains (MeSH), Infections à coronavirus (diagnostic), Infections à coronavirus (génétique), Infections à coronavirus (transmission), Infections à coronavirus (épidémiologie), Pandémies (prévention et contrôle), Phylogenèse (MeSH), Pneumopathie virale (diagnostic), Pneumopathie virale (transmission), Pneumopathie virale (épidémiologie), Protéines virales (génétique), RT-PCR (MeSH), Surveillance sentinelle (MeSH), Épidémies de maladies (prévention et contrôle).
- MESH :
- diagnostic : Infections à coronavirus, Pneumopathie virale.
- génétique : ARN viral, Coronavirus, Génome viral, Infections à coronavirus, Protéines virales.
- isolement et purification : Coronavirus.
- prévention et contrôle : Pandémies, Épidémies de maladies.
- épidémiologie : France, Infections à coronavirus, Pneumopathie virale.
- Analyse de séquence, Betacoronavirus, Humains, Phylogenèse, RT-PCR, Surveillance sentinelle.
- Wicri :
- geographic : France.
English descriptors
- KwdEn :
- Betacoronavirus (MeSH), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (diagnosis), Coronavirus Infections (epidemiology), Coronavirus Infections (genetics), Coronavirus Infections (transmission), Disease Outbreaks (prevention & control), France (epidemiology), Genome, Viral (genetics), Humans (MeSH), Pandemics (prevention & control), Phylogeny (MeSH), Pneumonia, Viral (diagnosis), Pneumonia, Viral (epidemiology), Pneumonia, Viral (transmission), RNA, Viral (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Sentinel Surveillance (MeSH), Sequence Analysis (MeSH), Viral Proteins (genetics).
- MESH :
- chemical , genetics : RNA, Viral, Viral Proteins.
- geographic , epidemiology : France.
- classification : Coronavirus.
- diagnosis : Coronavirus Infections, Pneumonia, Viral.
- epidemiology : Coronavirus Infections, Pneumonia, Viral.
- genetics : Coronavirus, Coronavirus Infections, Genome, Viral.
- isolation & purification : Coronavirus.
- prevention & control : Disease Outbreaks, Pandemics.
- transmission : Coronavirus Infections, Pneumonia, Viral.
- Betacoronavirus, Humans, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sentinel Surveillance, Sequence Analysis.
Abstract
Following SARS-CoV-2 emergence in China, a specific surveillance was implemented in France. Phylogenetic analysis of sequences retrieved through this surveillance suggests that detected initial introductions, involving non-clade G viruses, did not seed local transmission. Nevertheless, identification of clade G variants subsequently circulating in the country, with the earliest from a patient who neither travelled to risk areas nor had contact with travellers, suggests that SARS-CoV-2 might have been present before the first recorded local cases.
DOI: 10.2807/1560-7917.ES.2020.25.26.2001200
PubMed: 32643599
PubMed Central: PMC7346363
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<author><name sortKey="Enouf, Vincent" sort="Enouf, Vincent" uniqKey="Enouf V" first="Vincent" last="Enouf">Vincent Enouf</name>
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<author><name sortKey="Simon Loriere, Etienne" sort="Simon Loriere, Etienne" uniqKey="Simon Loriere E" first="Etienne" last="Simon-Loriere">Etienne Simon-Loriere</name>
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<author><name sortKey="Baidaliuk, Artem" sort="Baidaliuk, Artem" uniqKey="Baidaliuk A" first="Artem" last="Baidaliuk">Artem Baidaliuk</name>
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<author><name sortKey="Donati, Flora" sort="Donati, Flora" uniqKey="Donati F" first="Flora" last="Donati">Flora Donati</name>
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<author><name sortKey="Albert, Melanie" sort="Albert, Melanie" uniqKey="Albert M" first="Mélanie" last="Albert">Mélanie Albert</name>
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</author>
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<author><name sortKey="Barbet, Marion" sort="Barbet, Marion" uniqKey="Barbet M" first="Marion" last="Barbet">Marion Barbet</name>
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<author><name sortKey="Derrar, Fawzi" sort="Derrar, Fawzi" uniqKey="Derrar F" first="Fawzi" last="Derrar">Fawzi Derrar</name>
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<author><name sortKey="Enouf, Vincent" sort="Enouf, Vincent" uniqKey="Enouf V" first="Vincent" last="Enouf">Vincent Enouf</name>
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<author><name sortKey="Simon Loriere, Etienne" sort="Simon Loriere, Etienne" uniqKey="Simon Loriere E" first="Etienne" last="Simon-Loriere">Etienne Simon-Loriere</name>
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<series><title level="j">Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin</title>
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<term>Coronavirus (genetics)</term>
<term>Coronavirus (isolation & purification)</term>
<term>Coronavirus Infections (diagnosis)</term>
<term>Coronavirus Infections (epidemiology)</term>
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<term>Genome, Viral (genetics)</term>
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<term>Pneumonia, Viral (diagnosis)</term>
<term>Pneumonia, Viral (epidemiology)</term>
<term>Pneumonia, Viral (transmission)</term>
<term>RNA, Viral (genetics)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
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<term>Analyse de séquence (MeSH)</term>
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<term>Coronavirus (génétique)</term>
<term>Coronavirus (isolement et purification)</term>
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<term>Génome viral (génétique)</term>
<term>Humains (MeSH)</term>
<term>Infections à coronavirus (diagnostic)</term>
<term>Infections à coronavirus (génétique)</term>
<term>Infections à coronavirus (transmission)</term>
<term>Infections à coronavirus (épidémiologie)</term>
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<term>Sentinel Surveillance</term>
<term>Sequence Analysis</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term>
<term>Betacoronavirus</term>
<term>Humains</term>
<term>Phylogenèse</term>
<term>RT-PCR</term>
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<front><div type="abstract" xml:lang="en">Following SARS-CoV-2 emergence in China, a specific surveillance was implemented in France. Phylogenetic analysis of sequences retrieved through this surveillance suggests that detected initial introductions, involving non-clade G viruses, did not seed local transmission. Nevertheless, identification of clade G variants subsequently circulating in the country, with the earliest from a patient who neither travelled to risk areas nor had contact with travellers, suggests that SARS-CoV-2 might have been present before the first recorded local cases.</div>
</front>
</TEI>
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<DateCompleted><Year>2020</Year>
<Month>07</Month>
<Day>14</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>07</Month>
<Day>15</Day>
</DateRevised>
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<JournalIssue CitedMedium="Internet"><Volume>25</Volume>
<Issue>26</Issue>
<PubDate><Year>2020</Year>
<Month>07</Month>
</PubDate>
</JournalIssue>
<Title>Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin</Title>
<ISOAbbreviation>Euro Surveill.</ISOAbbreviation>
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<ArticleTitle>Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.2807/1560-7917.ES.2020.25.26.2001200</ELocationID>
<Abstract><AbstractText>Following SARS-CoV-2 emergence in China, a specific surveillance was implemented in France. Phylogenetic analysis of sequences retrieved through this surveillance suggests that detected initial introductions, involving non-clade G viruses, did not seed local transmission. Nevertheless, identification of clade G variants subsequently circulating in the country, with the earliest from a patient who neither travelled to risk areas nor had contact with travellers, suggests that SARS-CoV-2 might have been present before the first recorded local cases.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gámbaro</LastName>
<ForeName>Fabiana</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Université de Paris, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Evolutionary genomics of RNA viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Behillil</LastName>
<ForeName>Sylvie</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>These authors contributed equally.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Baidaliuk</LastName>
<ForeName>Artem</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Evolutionary genomics of RNA viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Donati</LastName>
<ForeName>Flora</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Albert</LastName>
<ForeName>Mélanie</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
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<Initials>A</Initials>
<AffiliationInfo><Affiliation>Mutualized Platform of Microbiology, Pasteur International Bioresources Network, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vanpeene</LastName>
<ForeName>Maud</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Mutualized Platform of Microbiology, Pasteur International Bioresources Network, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bizard</LastName>
<ForeName>Méline</ForeName>
<Initials>M</Initials>
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</AffiliationInfo>
</Author>
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<ForeName>Angela</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Barbet</LastName>
<ForeName>Marion</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Derrar</LastName>
<ForeName>Fawzi</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>National Influenza Centre, Viral Respiratory Laboratory, Algiers, Algeria.</Affiliation>
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</Author>
<Author ValidYN="Y"><LastName>van der Werf</LastName>
<ForeName>Sylvie</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>These authors co-supervised this work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
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</Author>
<Author ValidYN="Y"><LastName>Enouf</LastName>
<ForeName>Vincent</ForeName>
<Initials>V</Initials>
<AffiliationInfo><Affiliation>These authors co-supervised this work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Mutualized Platform of Microbiology, Pasteur International Bioresources Network, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Molecular Genetics of RNA Viruses, CNRS - UMR 3569, University of Paris, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Simon-Loriere</LastName>
<ForeName>Etienne</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>These authors co-supervised this work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Evolutionary genomics of RNA viruses, Institut Pasteur, Paris, France.</Affiliation>
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<Reference><Citation>Euro Surveill. 2020 Feb;25(6):</Citation>
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<Reference><Citation>N Engl J Med. 2020 Apr 30;382(18):1708-1720</Citation>
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<Reference><Citation>Science. 2020 May 1;368(6490):489-493</Citation>
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<Reference><Citation>Nat Microbiol. 2019 Jan;4(1):10-19</Citation>
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<Reference><Citation>Lancet Infect Dis. 2020 Jun;20(6):697-706</Citation>
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<Reference><Citation>J Med Virol. 2020 Mar 29;:</Citation>
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<country name="Algérie"><region name="Wilaya d'Alger"><name sortKey="Derrar, Fawzi" sort="Derrar, Fawzi" uniqKey="Derrar F" first="Fawzi" last="Derrar">Fawzi Derrar</name>
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